my OpenSource contributions

published opensource projects

• Perl
  • DBIx::Class::LookupColumn (with Thomas Rubbatel) - https://metacpan.org/pod/DBIx::Class::LookupColumn::Auto
• R
  • srcpkgs: https://github.com/kforner/srcpkgs
  • RcppProgress: https://github.com/kforner/rcpp_progress
  • Plinker: https://github.com/kforner/plinker_pkg (note: not on CRAN)
  • quartzbio.edp: https://github.com/kforner/quartzbio.edp
  • allelic (fueatest): https://cran.r-project.org/web/packages/allelic/index.html (removed from CRAN), https://github.com/kforner/fueatest
  • snplinkage (with others): https://cran.r-project.org/web/packages/snplinkage/

Deprecated or no longer pertinent

• Transmart docker: https://github.com/kforner/docker_transmart
• R coverage patch: adding test coverage support in the R interpreter
  • https://github.com/kforner/r-coverage-patch
  • https://github.com/kforner/r-coverage-docker

contributions to existing projects

R packages

• debugme: https://github.com/r-lib/debugme/pull/21
• devtools:
  • https://github.com/r-lib/devtools/pull/334
• covr:
  • https://github.com/r-lib/covr/pull/202
  • https://github.com/r-lib/covr/pull/193
  • https://github.com/r-lib/covr/pull/123
  • https://github.com/r-lib/covr/pull/32
  • https://github.com/r-lib/covr/pull/30
• httptest:
  • https://github.com/nealrichardson/httptest/pull/79
  • https://github.com/nealrichardson/httptest/pull/77
• httptest2 - https://github.com/nealrichardson/httptest2/pull/22
• knitr:
  • https://github.com/yihui/knitr/pull/1345
  • https://github.com/yihui/knitr/pull/832
  • https://github.com/yihui/knitr/pull/831
• testthat:
  • https://github.com/r-lib/testthat/pull/823
  • https://github.com/r-lib/testthat/pull/268
  • https://github.com/r-lib/testthat/pull/214
  • https://github.com/r-lib/testthat/pull/120
  • https://github.com/r-lib/testthat/pull/106
  • https://github.com/r-lib/testthat/pull/98
  • https://github.com/r-lib/testthat/pull/96
  • https://github.com/r-lib/testthat/pull/85

other

• trivy-offline - https://github.com/sighupio/trivy-offline/pull/13
• sast-parser - https://github.com/pcfens/sast-parser/pull/5
• mt-aws-glacier: https://github.com/vsespb/mt-aws-glacier/pull/24
• rocker:
  • https://github.com/rocker-org/website/pull/4
  • https://github.com/rocker-org/rocker-versioned/pull/57
  • https://github.com/rocker-org/rocker-versioned/pull/7
  • https://github.com/rocker-org/rocker-versioned/pull/5
  • https://github.com/rocker-org/rocker-versioned/pull/3
• swig: Incorporated some patches to the Perl5 module related to the -hide option and the destruction of objects. Patch submitted by Karl Forner.

draft

• rclone - https://github.com/rclone/rclone/pull/5556

important bug reports leading to official fixes

• R
  • R 3.0.3 - namespaceImportFrom() needed to detect primitive functions when checking for duplicated imports (reported by Karl Forner).
  • R 3.0.2 - package.skeleton() was not starting its search for function objects in the correct place if environment was supplied. (Reported by Karl Forner.)
  • R 3.0.1 - The return value when all workers failed from parallel::mclapply(mc.preschedule = TRUE) was a list of strings and not of error objects. (Spotted by Karl Forner and Bernd Bischl.)